FastQCFastQC Report
Sun 21 May 2023
EGAF00007948525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540499
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45410.8401495654941082No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23680.43811366903546534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18570.3435714034623561No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA11040.20425569705031832No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.20407068283197563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10170.1881594600545052No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.1409808343771219No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7310.13524539360849883No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG6730.12451456894462339No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.11396875849909065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5740.10619816132869811No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5510.10194283430681647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)