FastQCFastQC Report
Sun 21 May 2023
EGAF00007948529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515859
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42430.8225115777760977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29400.5699231766820003No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA25210.48869943143378325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20740.4020478464076424No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17890.34680019152520364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16720.32411957531030766No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16700.3237318724690274No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16240.31481470711958115No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14750.28593084544420083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14510.2812784113488376No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14000.27139198889619065No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13780.26712725764210765No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13340.2585977951339416No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12210.23669258460160625No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11690.22661231072831917No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10290.19947311183870012No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10160.19695304337037836No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10150.19675919194973823No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9270.1797002669334062No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8900.17252776436972117No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG8590.16651837032987696No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8470.16419215328219533No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8220.15934586776619192No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8210.1591520163455518No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7950.15411187940890825No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7950.15411187940890825No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7730.14984714815482525No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7170.13899146859897762No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6870.13317592597977354No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6400.12406490920968714No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6240.12096328647944496No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG6130.11883092085240346No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5490.10642442993143476No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5410.10487361856631365No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5270.10215969867735175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)