FastQCFastQC Report
Wed 31 May 2023
EGAF00007948530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497417
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13200.26537090610091735No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10820.21752372757666105No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9210.18515651857495824No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8030.16143396787805805No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7780.15640800374735886No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7520.1511810010514317No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7340.14756230687732827No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6850.13771141718115787No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5100.10252966826626352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)