FastQCFastQC Report
Sun 21 May 2023
EGAF00007948531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497417
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41700.8383308170006253No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18170.36528707301921726No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13600.27341244871003606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13030.2619532504920419No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8550.17188797326991237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8160.16404746922602162No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7800.15681008087781478No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.15399554096462326No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7130.14334049700754095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6130.1232366404847442No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5330.10715355526650677No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5070.1019265525705796No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5030.10112239830966775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)