FastQCFastQC Report
Sun 21 May 2023
EGAF00007948532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548042
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT38100.6952021925326891No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT14420.26311852011342196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11670.2129398841694615No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10220.1864820579444641No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8440.1540027954061915No Hit
GTGACGACGAGCCAGTTCAGCGGCCTGGCGTTTCGCTTCTTCCG6470.11805664529360889No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6270.11440728995222994No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5960.10875078917309258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)