FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548042
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG38220.6973918057375165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19800.3612861787965156No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG15030.2742490539046277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.2129398841694615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.16805281347050044No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT7230.13192419559084886No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6700.12225340393619469No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6320.11531962878757467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)