FastQCFastQC Report
Sun 21 May 2023
EGAF00007948534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529790
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT36310.685365899696106No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT13420.2533079144566715No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11320.21366956718699864No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10120.19101908303289983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8510.16062968345948395No Hit
GTGACGACGAGCCAGTTCAGCGGCCTGGCGTTTCGCTTCTTCCG6110.11532871515128637No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6100.11513996111666887No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5450.10287094886653203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)