FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529790
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41810.7891806187357254No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG36200.6832896053153136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20460.3861907548273844No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG14340.2706732856414806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11350.21423582929085108No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT6890.13005152985145058No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6510.12287887653598596No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5780.10909983200890919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)