FastQCFastQC Report
Sun 21 May 2023
EGAF00007948536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443424
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24800.5592841163310962No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22340.503806740275673No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19590.44178934834379735No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14420.32519665151187127No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14160.31933318900194846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13410.3024193548387097No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10760.24265714079526593No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9380.21153568593490654No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7970.1797376777080176No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7420.1673341993216425No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7090.15989211228981742No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6970.1571858988236992No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6770.15267554304683553No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6350.1432037959154218No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6200.13982102908277405No Hit
CAGGACCGCTTTGTCAGCGTCGTTTACGCCCAGGGTACCGCCAG5810.1310258353178899No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5200.11726925019845565No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5130.11569062567655336No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4980.11230785884390562No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4920.1109547521108465No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4680.10554232517861009No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4650.10486577181208054No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4560.10283611171249189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)