FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443424
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48541.0946633470448148No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25830.5825124485819442No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15760.35541603521685794No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15720.35451396406148517No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.3073807461932597No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12280.2769358446994299No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10170.2293515912535181No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8600.1939452984051382No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8520.19214115609439272No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8190.18469906906256767No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7880.17770801760842897No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7760.17500180414231076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6840.1542541675687378No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6640.14974381179187415No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6580.14839070505881505No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6330.14275276033773543No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6240.14072310023814677No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5950.13418308436169446No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA5940.13395756657285127No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.12448581944143754No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5320.11997546366457387No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5090.11478855452118063No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5070.11433751894349427No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4900.11050371653316014No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4740.10689543191166918No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4660.10509128960092373No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4550.1026105939236487No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4500.10148300497943277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)