FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546206
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21230.38868119354236313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14400.2636367963735294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.18417959524428512No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.17411013427168504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9440.17282856651153594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.11296104400171363No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6110.11186255735015727No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.1050885563322263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.10051152861740807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)