FastQCFastQC Report
Wed 31 May 2023
EGAF00007948545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578536
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61681.066139358657024No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18970.3278966218178298No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17160.29661075542403587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16290.2815727975441459No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15200.2627321376716401No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14950.25841088540730395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14680.2537439329618209No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13480.23300192209300716No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13100.22643361865121617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13090.22626076856064273No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13000.2247051177454817No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12670.21900106475655792No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12010.2075929587787104No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11390.19687625316315666No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11280.19497490216684873No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10980.18978939944964532No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9980.17250439039230056No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.17215869021115368No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9210.1591949334181451No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8500.14692257698743033No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8420.14553977626284276No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8410.14536692617226932No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8340.14415697553825518No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8170.14121852399850657No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8050.1391443229116252No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7330.12669911639033699No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7180.12410636503173529No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6920.11961226267682565No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6750.11667381113707703No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6370.11010550769528604No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6370.11010550769528604No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6080.10509285506865607No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6070.10492000497808261No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5890.10180870334776054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)