FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574064
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57691.004940215725076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44980.7835363304439923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38830.6764054182112099No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23200.40413612419521167No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23060.4016973717216199No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21930.382013155327629No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18020.31390228267231524No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16770.29212770701524565No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15300.26652080604253187No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15130.2635594637531704No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14690.2558948131218819No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10650.18551938459823294No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10340.1801192898352797No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10160.17698375094066168No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9710.1691449037041166No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9220.16060927004654535No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8780.15294461941525683No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8270.14406059254717243No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8090.14092505365255442No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6880.11984726441651104No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.11827949496920204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6540.11392457983778813No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6280.10939546810111765No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6270.1092212714958611No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.10329858691713815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)