FastQCFastQC Report
Sun 21 May 2023
EGAF00007948548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580397
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG28230.48639121153279563No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21980.3787062993089213No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21170.3647503346847072No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT18130.3123723933790147No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16270.2803253635011897No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13190.22725823875726442No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11140.19193758754783363No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9730.16764387135012757No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8350.14386704273109613No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG7670.13215092428113862No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7530.1297387822473238No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7180.12370842716278685No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6110.10527277019005957No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT6090.10492817847094316No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6000.10337751573491938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)