FastQCFastQC Report
Sun 21 May 2023
EGAF00007948549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580397
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47040.810479723361768No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC31250.5384245611193718No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22950.39541899768606664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21990.3788785951684795No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18410.31719667744664426No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.22329543398742585No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9350.16109662868691602No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8300.14300556343330514No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8040.13852587108479197No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7640.131634036702464No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7360.12680975263483443No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6930.11940103067383187No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6550.11285378801062032No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6200.10682343292608336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)