FastQCFastQC Report
Sun 21 May 2023
EGAF00007948550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554549
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25500.4598331256570655No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15990.28834241879437167No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG14960.2697687670521451No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14410.25985079767522795No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13320.24019518563733774No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12850.23171982998797222No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12800.23081819640825246No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12760.23009688954447668No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT11960.2156707522689609No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10180.1835725968309383No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9640.17383495416996514No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9420.16986776641919832No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9110.16427763822493593No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8600.15508097571179463No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8590.15490064899585068No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8350.15057280781319596No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8350.15057280781319596No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8250.14876954065375647No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8230.1484088872218686No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8080.14570398648270935No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7950.14335973917543807No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG7800.14065483843627885No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7760.13993353157250304No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7220.13019588891152992No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6780.12226151340999623No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6630.11955661267083703No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6480.11685171193167783No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5950.1072943959866486No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5930.10693374255476072No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5630.10152394107644229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)