FastQCFastQC Report
Wed 31 May 2023
EGAF00007948551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554549
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44280.7984866981997983No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25300.4562265913381865No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20650.3723746684242511No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16200.29212927982919457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15850.2858178447711564No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15640.2820309837363335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15450.27860477613339846No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG15360.276981835689903No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14030.25299838246935796No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13810.24903119471859114No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA13520.2438017199562167No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12790.2306378696923085No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10890.19637579366295854No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9970.1797857357961154No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9610.17329397402213328No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9170.16535959852059964No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9160.16517927180465566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8510.1534580352682991No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA8370.15093346124508386No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8180.14750725364214884No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC8160.14714660021026096No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8020.1446220261870457No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7850.14155647201599858No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7560.1363269972536241No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6900.12442543400132361No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6820.12298282027377201No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6300.11360583104468676No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5850.10549112882720912No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG5700.10278622808804992No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5680.10242557465616205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)