FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540435
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16040.29679794979969837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13900.2572002183426314No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12500.2312951603800642No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10290.19040217602486886No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA9770.1807802973530582No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7680.14210774653751146No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7410.13711177107330205No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7090.13119061496757242No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG7070.13082054271096433No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6840.12656471175997114No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6660.1232340614504982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)