FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540435
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44770.828406746417238No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33870.626717366565822No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12620.23351559391971283No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10100.18688648958709186No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA9580.1772646109152812No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9120.16875294901329485No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7790.14414314394885602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7580.14025738525447093No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7500.13877709622803852No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7380.1365566626883899No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7240.1339661568921332No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7080.13100557883926836No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG6750.12489938660523467No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6590.12193880855236984No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6330.11712786921646452No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6090.11268700213716727No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5680.10510052087670117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)