FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558843
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22290.398859787095839No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11290.20202453998708045No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10380.18574089681717407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10320.18466725001476264No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10230.18305677981114554No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9670.17303607632197235No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9360.16748890117618007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8900.15925760902435926No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7830.14011090771468912No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7090.1268692638182817No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6590.11792220713151993No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.1045016221013773No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.1028911518977602No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5700.101996446229084No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5610.10038597602546691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)