FastQCFastQC Report
Wed 31 May 2023
EGAF00007948557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548665
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17400.3171334056300293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14230.2593568024204205No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12440.2267321589676761No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12300.22418051087639998No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12110.22071755989538244No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10950.19957533285338047No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10560.19246717031339708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10220.1862703106631551No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9910.18062023274675804No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9750.17770406349958537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9710.17697502118779218No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9200.16767973171242925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.16731521055653267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9070.16531034419910146No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8400.15309888547656586No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8220.14981819507349656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8180.1490891527617034No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7830.14271003253351316No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7800.1421632507996683No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7520.1370599546171161No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6980.1272178834079083No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6930.12630658051816682No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6920.12612431994021853No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6910.12594205936227024No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.12211458722535609No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6550.11938067855613171No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6550.11938067855613171No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6330.11537094584126928No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6150.11209025543819999No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6060.11044991023666537No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5980.10899182561307902No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5820.10607565636590634No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5770.10516435347616487No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5720.1042530505864234No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5690.10370626885257853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)