FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574124
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA47390.825431439898001No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA43550.7585469341117946No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30030.5230577366561928No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC14180.24698497188760615No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12880.2243417798245675No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA11940.20796901017898572No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11330.19734412774940605No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11240.19577652214504185No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT11190.19490563014261728No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9550.1663403724630916No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9490.16529530206018211No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9210.16041830684660457No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8870.15449624123011754No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8780.15292863562575332No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8200.1428262883976284No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8010.13951689878841503No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7720.13446572517435257No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC7630.13289811956998837No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7490.13045962196319957No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7340.12784694595592588No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6890.12000891793410481No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6290.10955821390501008No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG6090.10607464589531182No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5790.10084929388076444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)