FastQCFastQC Report
Wed 31 May 2023
EGAF00007948559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574124
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT101451.767039872919439No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30010.5227093798552229No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13220.23026384544105452No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG12170.2119751133901387No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11890.20709811817656115No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11670.20326619336589308No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10490.1827131421086734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9940.17313333008200318No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9930.1729591516815183No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9640.16790797806745583No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG9600.16721126446551615No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9390.163553518055333No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.15832816604078562No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8930.155541311633027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8890.15484459803108735No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA8250.14369718040005294No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8230.14334882359908313No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA7630.13289811956998837No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG7340.12784694595592588No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7000.12192488033943887No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6630.1154802795214971No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6080.1059004674948269No Hit
AACGGTTTTGTAGCTTGGGATTCCCAGTACA5990.10433286189046267No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5840.10172018588318901No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCA5760.1003267586793097No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5760.1003267586793097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)