FastQCFastQC Report
Wed 31 May 2023
EGAF00007948561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561346
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39420.7022406857802496No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25700.45782814877098976No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23780.42362464504957725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23740.4229120720553811No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG23680.421843212564087No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14160.2522508399454169No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA14130.25171641019976987No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13700.24405625051216184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12660.22552935266306343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12560.22374792017757322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11220.19987672487200409No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.1670983671389838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9300.1656732211505916No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9130.16264478592525822No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7910.14091130960227738No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7860.14002059335953226No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7620.1357451553943557No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA7040.12541284697851235No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6520.11614939805396314No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6480.11543682505976707No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6410.11418982231992389No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5800.10332308415843347No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5750.10243236791568837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)