FastQCFastQC Report
Wed 31 May 2023
EGAF00007948562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543010
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25260.4651848032264599No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22750.4189609767775916No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19350.35634702859984163No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17860.32890738660429825No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15740.28986574832876005No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13770.2535864901198873No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13160.24235281118211452No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12460.22946170420434248No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11320.20846761569768513No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10590.19502403270657998No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10210.1880260032043609No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9330.1718200401465903No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8620.15874477449770724No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8100.1491685235999337No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7870.14493287416438003No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7500.13811900333327193No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7490.1379348446621609No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6570.12099224691994623No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6350.11694075615550359No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6320.11638828014217051No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6230.11473085210217124No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5890.10846945728439623No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5830.10736450525773006No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5690.10478628386217566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)