FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543010
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44870.8263199572751883No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31090.57254930848419No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25690.4731036260842342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19090.3515589031509549No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18410.33903611351540486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16740.308281615439863No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15940.29354892175098063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14380.2648201690576601No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13040.24014290712878217No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12880.2371963683910057No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12650.232960718955452No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11520.2121507891199057No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10680.19668146074657925No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9500.1749507375554778No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9040.16647943868437046No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8410.1548774424043756No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8030.1478794129021565No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7990.14714277821771238No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7430.13682989263549475No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7150.13167344984438592No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7050.12983186313327563No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6810.12541205502661093No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6760.12449126167105577No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6480.11933481887994697No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5710.10515460120439771No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5530.1018397451243992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)