FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544083
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43670.8026348921028593No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29990.5512026657697446No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29940.5502836883343166No Hit
ATGTCCAACATGGACATCGATGGTATTAACA23220.4267731210127867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18330.3368971278279233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14510.26668725176122027No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14430.2652168878645354No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13230.24316142941426216No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12620.23194990470203994No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10720.19702876215577403No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9440.17350293980881593No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7870.14464704833637515No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6870.12626749962781414No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6720.12351056732153No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6510.11965086209273217No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6300.11579115686393437No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6050.11119626968679411No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5980.10990970127719485No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5750.10568240507422581No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5490.10090372240999994No Hit

[OK]Adapter Content

Adapter graph