FastQCFastQC Report
Sun 21 May 2023
EGAF00007948568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524744
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9180.17494244812708673No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8240.157028951260043No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7370.1404494382022472No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7350.1400682999710335No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6640.12653789276294727No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6200.11815285167624595No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC6170.11758114432942539No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5830.11110179439879256No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5380.10252618419648438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)