FastQCFastQC Report
Wed 31 May 2023
EGAF00007948570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528131
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9410.17817549055063991No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9170.1736311634802729No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8630.16340642757194712No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6950.13159613807937803No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6770.12818789277660278No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6390.12099270824852168No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6210.11758446294574641No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6060.11474425852676703No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5960.11285078891411411No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5500.10414082869591068No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5380.10186866516072716No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5290.10016454250933954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)