FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562225
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29080.5172306460936458No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25540.454266530303704No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT22510.40037351594112675No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14750.2623504824580906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13710.24385255013562188No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13510.24029525545822403No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13400.2383387433856552No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10450.1858686468940371No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG10430.1855129174262973No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10310.1833785406198586No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9480.16861576770865755No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9470.16843790297478767No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8040.1430032460313931No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7930.1410467339588243No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7740.13766730401529637No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA7540.13411000933789854No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7320.1301969851927609No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7250.12895193205567165No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7140.12699541998310285No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7130.12681755524923294No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7120.12663969051536306No Hit
TTCAATAAAACCAGCGATTGCACCGAAGATACCACGGGTCTGCT6980.12414958424118458No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6970.12397171950731468No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6530.11614567121703945No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6490.11543421228155987No Hit
TTTCAGATCTGCCGCCTGGCCAGTACCTTCGGAGTTCTGGTGAC6370.11329983547512118No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6320.1124105118057717No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6270.11152118813642226No Hit
GAAGATACCACGGGTCTGTTTTTCCGGGACGTTACGCATGCCGG6110.10867535239450399No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5840.10387300458001691No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5690.10120503357196851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)