FastQCFastQC Report
Wed 31 May 2023
EGAF00007948573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562225
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57821.0284138912357152No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31420.5588509938192006No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT24140.4293654675619192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19150.34061096536084307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15970.2840499799902174No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13580.24154030859531325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13570.2413624438614434No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11660.20739027969229404No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC11240.19991996086975855No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10440.1856907821601672No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.18444572902307796No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9150.16274623149095113No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8700.154742318466806No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8440.1501178353861888No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7760.13802303348303616No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7730.13748943928142648No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7650.13606652141046735No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7430.1321534972653297No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7370.13108630886211037No Hit
TCCATTCCGAACGACAAACCATTCCAGAACG7230.12859620258793186No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7190.1278847436524523No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7090.12610609631375339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7020.12486104317666413No Hit
AAGCTGGCTACCGGTATGCGCAACGTCCCGG6930.1232602605718351No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6890.12254880163635555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6870.12219307216861576No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6280.11169905287029215No Hit
TCTGAATGTATCACTCCGAACGGTTCCATTC6160.10956467606385344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)