FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539445
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27060.5016266718571866No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT23910.44323332313766933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23430.43433528904707613No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16680.3092066846481106No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT14360.26619951987691054No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14200.2632335085133795No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11250.208547673998276No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT11210.20780617115739325No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9270.1718432833745794No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8770.16257449786354494No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8760.16238912215332424No Hit
GCGGAAGGCATCGGAGTCATAGCGACGCTTGTCCTGTGCGATGT8430.1562717237160415No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8170.15145195525030355No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7830.1451491811028001No Hit
AAACAGACGGCCCTGCAGCAGCGGATCGTCGGTGAAGTCCACAC7800.144593053972138No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7780.14422230255169666No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7750.14366617542103458No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7530.1395879097961794No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG7440.1379195284041932No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7310.13550964417132422No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7050.1306898757055863No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6460.11975270880256561No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6180.11456218891638628No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6170.11437681320616559No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6060.11233768039373801No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5850.10844479047910352No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5760.10677640908711732No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT5640.10455190056446904No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.1017712649111587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)