FastQCFastQC Report
Sun 21 May 2023
EGAF00007948575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539445
Sequences flagged as poor quality0
Sequence length31
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55451.027908313173725No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG24200.4486092187340693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17190.3186608458693657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16790.31124581746053814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16680.3092066846481106No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15630.2897422350749381No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA14100.2613797514111726No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC11100.20576703834496568No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10250.19001010297620705No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9440.17499467044833117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.17388241618700703No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA8970.16628201206795873No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA8540.15831085652846907No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7990.14811519246633115No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7910.14663218678456563No Hit
GTTCCGGAAGAAATCATCCCGGTTACCAAAC7870.14589068394368288No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7320.13569501988154492No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG7280.13495351704066216No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7270.13476814133044146No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7100.13161675425668976No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6920.12827999147271735No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6750.1251286043989656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.11641594601859317No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG6180.11456218891638628No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6020.11159617755285525No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5770.106961784797338No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5700.10566415482579318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)