FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576162
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33800.5866405628972406No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18650.32369368337377336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15780.27388130421652246No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13850.24038378095049656No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11870.2060184462008949No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9950.17269448523158418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.16887611470385067No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9720.1687025524071355No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9710.16852899011042033No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9120.1582888146042259No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9070.15742100312065008No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8720.1513463227356195No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8280.14370958168015247No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.12947747334950935No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.11993154703017556No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6520.11316261745828429No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT6160.10691437477653855No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5910.10257531735865955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)