FastQCFastQC Report
Wed 31 May 2023
EGAF00007948579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45760.8316764022725702No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32600.5924967376329937No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16690.303336519972229No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15190.27607440014249No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12930.23499947293234993No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC10780.19592376784305743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9210.1673894157545973No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9170.16666242589247093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8910.1619369917886495No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8480.154121850770791No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8480.154121850770791No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8470.1539401033052594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7940.14430748763208498No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6830.12413351895807813No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6710.12195254937169903No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6550.11904458992319353No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5810.10559527747385562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)