FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530218
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18130.34193482680708687No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17930.3381627934170473No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16310.3076093229577268No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15600.29421860442308634No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11670.22009814830880886No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA9430.17785137434036566No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8140.15352175897461043No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6990.13183256698188292No Hit
GAAGGTGCCGGTGCCAGCCACGCTCGGTGCAAAAATGGCGTTGG6780.12787193192234136No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.12183667849827806No Hit
CTTGGTCACACGCGGGCCGTAAGTAGCGGTACCGTCCGCGTGGG6040.11391540837919498No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5900.11127498500616727No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5510.10391951989559012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)