FastQCFastQC Report
Wed 31 May 2023
EGAF00007948581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530218
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43580.8219260756896221No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38120.7189495641415418No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18290.3449524535191185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15300.28856055433802696No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12630.23820390858099874No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG9550.1801145943743894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8220.15503057233062625No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7160.13503879536341656No Hit
TCTGCGGACGGCGTAAACTGGACCACTCTGT6890.12994655028686314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.12975794861736117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.12919214360885523No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6850.12919214360885523No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6090.11485841672670488No Hit
CAGGTCTCTTATGGTGCACGTCCGACCCAGA5660.1067485449381198No Hit
GACACCGGCTGGCGTAAAATTAATAACGATT5530.10429672323459407No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5360.10109049485306043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)