FastQCFastQC Report
Sun 21 May 2023
EGAF00007948582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519594
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17270.3323748927046887No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16740.3221746209540526No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15740.30292882519813547No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13410.2580861210868486No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13320.25635399946881604No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13270.2553917096810202No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12040.2317193809012421No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT10520.2024657713522481No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10300.1982316962859463No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10060.19361270530452623No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9950.19149566777137533No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA9030.1737895356759316No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8770.16878562877939315No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8500.16358926392529552No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8270.15916273090143457No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8200.15781552519852038No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7030.13529794416409735No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6740.1297166633948814No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6050.11643706432329859No Hit
CTGACGGCCAACACGGCCACGGCGCTGTGCGGCAGACGCGGTAG5690.10950857785116841No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5650.10873874602093173No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5640.10854628806337256No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5480.10546696074242581No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5390.10373483912439328No Hit
AATGTTGGTGCGGCCATCGATAACACGGGACACGTCCAGGTTTG5280.1016178015912424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)