FastQCFastQC Report
Wed 31 May 2023
EGAF00007948583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43000.8275692175044362No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32140.6185598755951762No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24100.46382367771760263No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16420.3160159663121591No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16410.31582350835459994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14760.2840679453573367No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14480.2786791225456799No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14050.2704034303706355No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11340.21824732387210016No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10650.20496772480051734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10210.1964995746679138No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG10090.19419007917720374No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT9250.17802361074223336No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8970.17263478793057657No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8860.17051775039742567No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8730.16801579694915644No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8370.1610873104770263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8190.15762306724096123No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6000.11547477453550273No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.113550194959911No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5830.11220298925699682No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5820.11201053129943764No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5810.11181807334187847No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5780.11124069946920095No Hit
CGTGACGAGAAACCGGACTTCGTTGTAACCA5770.11104824151164179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)