FastQCFastQC Report
Wed 31 May 2023
EGAF00007948584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544767
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC19190.35226069126801No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11720.21513784792397483No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9340.1714494453592086No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8310.1525422795433644No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6720.12335548959463404No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6410.1176649833782149No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6040.11087308886184369No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5960.10940457112857424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)