FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544767
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43060.790429669932283No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC19130.3511593029680579No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11410.20944734170755572No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9490.17420291610908883No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9200.16887953932598707No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6800.12482400732790348No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6320.11601290092828677No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6300.11564577149496941No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5940.10903744169525686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)