FastQCFastQC Report
Sun 21 May 2023
EGAF00007948586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381584
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10820.2835548660321187No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9780.25630005450962307No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9170.2403140592896977No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8600.22537632605140676No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7730.20257662795085749No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT6870.1800389953457168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6190.16221854165793115No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6180.16195647616252254No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5640.14780493941045747No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4740.12421904482368233No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4680.12264665185123065No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG4560.1195018659063273No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4470.1171432764476498No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4290.11242609753029477No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4200.11006750807161726No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4170.10928131158539141No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC3930.10299173969558473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)