FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438115
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65261.4895632425276468No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21330.486858473231914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9690.2211748057016993No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9370.21387078735035323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8250.18830672312064184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7660.17483993928534744No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.16639466806660352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.13033107745683212No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5230.11937504992981295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.11663604304805815No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4870.11115802928454857No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4720.10773427068235508No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4700.10727776953539596No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4510.1029410086392842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)