FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431840
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG16650.38555946646906264No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8620.199610967024824No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8110.18780103742126714No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7120.1648758799555391No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7050.16325490922563912No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5420.12550944794368282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5400.1250463134494257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)