FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426809
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28040.6569683394680056No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23100.5412257004889776No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18610.43602641931168273No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18230.42712313939021906No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17710.4149397037082161No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16820.394087284944788No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15410.36105143049935684No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14470.3390275275357361No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14020.3284841697340028No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13800.3233296392531554No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13000.3045858920500739No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11740.2750644902052206No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11670.27342441232495096No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA10910.25561785248202357No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9830.2303137937578636No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9760.22867371587759394No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8690.20360395399347248No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8630.20219817295324136No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8490.19891801719270213No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8480.1986837203526636No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8180.19165481515150806No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8110.1900147372712384No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7980.1869688783507377No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7880.1846259099503525No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7330.17173958374823398No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7290.1708023963880799No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6900.1616648196265777No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6900.1616648196265777No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6810.15955614806623103No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6670.15627599230569178No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6530.15299583654515253No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.14479544714380438No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6140.1438582597836503No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6070.14221818190338067No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5820.13636076090241772No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5740.13448638618210956No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5720.13401779250203252No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5670.1328463083018399No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5550.1300347462213777No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5390.1262859967807614No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5300.12417732522041476No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5280.12370873154033772No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5150.12066287261983698No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG4960.11621123265910512No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4890.1145711547788355No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4870.11410256109875846No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4790.1122281863784503No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4780.1119938895384118No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4750.11129099901829624No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4700.11011951481810366No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4600.10777654641771846No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4540.10637076537748735No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4480.10496498433725625No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4470.10473068749721771No Hit
GACTTCGCTCATCAGTGCCTGCAGGCGGCAA4440.10402779697710218No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4380.10262201593687105No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4280.10027904753648588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)