FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403744
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25650.6353035586906555No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24270.6011234841880003No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC21420.5305341998890386No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21310.5278097011967979No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18620.4611833240865499No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17840.44186415154157094No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14600.3616152809701197No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14530.35988150907505745No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14390.356413965284933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14230.3524510580962194No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13580.3363517476420702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11840.2932551319648094No Hit
CGGCTGGTCTTCGGCCGTTGCTTCATCGTCGTGCAGATAATCCG11120.275422049615598No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10390.257341285567092No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9630.23851747642070223No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8900.22043671237219625No Hit
CGGCTGGTCCTCTGCAGTAGCTTCTTCATCGGACAGGTAATCCG8770.2172168502813664No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8610.21325394309265278No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8410.20830030910676073No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8350.2068142189109931No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8140.20161290322580644No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7800.19319172544978996No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7470.18501822937306808No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7390.18303677577871127No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7040.17436791630340018No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7030.17412023460410556No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6940.17189109931045415No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6420.15901165094713482No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6240.154553380359832No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6040.14959974637393994No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6030.14935206467464532No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5800.14365538559086946No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5790.14340770389157487No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5700.14117856859792344No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5610.138949433304272No Hit
CGGCTGGTCAACTGGGTTTGCTTCGGAATCGCGCAGGTACTCCG5430.13449116271696918No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC5420.13424348101767455No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4950.12260244115082826No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4620.11442894507410635No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4310.10675081239597368No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4140.10254022350796545No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4070.10080645161290322No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4040.10006340651501941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)