FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412683
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26060.6314774294070752No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24390.5910105335087706No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22770.5517552213199962No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC21400.5185578276788722No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18370.4451358548813496No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17840.43229306756033076No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15520.3760755834381353No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14840.3595980449885263No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14320.34699757440941353No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13970.338516488442703No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13630.3302777192178985No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11850.28714533915862783No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11180.2709101174509248No Hit
CGGCTGGTCTTCGGCCGTTGCTTCATCGTCGTGCAGATAATCCG10360.2510401446146316No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10310.24982856090510147No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9290.22511225323068795No Hit
CGGCTGGTCCTCTGCAGTAGCTTCTTCATCGGACAGGTAATCCG9260.22438530300496995No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8900.21566190029635338No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8800.21323873287729325No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8730.21154251568395113No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8650.20960398174870298No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8110.19651887768577816No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7320.177375855075203No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7250.1756796378818609No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7050.1708333030437406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7050.1708333030437406No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6860.1662292849475263No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6710.16259453381893607No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6600.15992904965796992No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6280.15217491391697743No Hit
CGGCTGGTCAACTGGGTTTGCTTCGGAATCGCGCAGGTACTCCG6140.14878247953029322No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6090.14757089582076316No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5940.14393614469217295No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5890.14272456098264286No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5690.13787822614452255No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5470.13254725782259022No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4990.1209160542111015No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC4940.11970447050157142No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4890.11849288679204135No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4270.1034692487938684No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4230.10249998182624437No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4220.10225766508433834No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4190.10153071485862031No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4170.10104608137480828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)