FastQCFastQC Report
Wed 31 May 2023
EGAF00007948610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464581
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16120.3469793211517475No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14160.30479076845587744No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12460.2681986564237453No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10330.222350892524662No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10190.21933742447495702No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10170.21890692903928488No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9910.213310488375547No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9020.19415344148813662No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8420.18123857841797233No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8250.1775793672147591No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8220.1769336240612509No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7870.1693999539369884No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7810.16810846762997195No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7460.16057479750570947No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6690.14400072323233193No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAGTGT6670.1435702277966598No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6400.13775853941508587No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6000.12914863070164298No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5750.1237674377557412No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5690.12247595144872477No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5530.11903198796334762No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5330.11472703360662617No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT5310.11429653817095405No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5300.11408129045311798No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5300.11408129045311798No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4840.10417989543265868No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4740.10202741825429795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)