FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464581
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31360.6750168431339206No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24110.5189622477027687No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16950.36484488173214147No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15500.33363396264591105No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12620.2716426199091224No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC11620.25011784812551524No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11110.2391402145158756No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10270.22105940621764555No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10070.21675445186092415No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.204270084226432No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9240.19888889128053022No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8670.18661977136387412No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8580.18468254190334946No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8570.1844672941855134No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8500.1829605601606609No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8270.17800986265043126No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8030.17284391742236552No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7730.1663864858872834No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7590.16337301783757838No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6900.14852092530688943No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6550.14098725518262692No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6060.1304401170086594No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6050.13022486929082333No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5790.12462842862708548No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5700.12269119916656084No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5550.11946248339901977No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5440.11709475850282297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5100.10977633609639655No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG5040.10848484978938011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)