FastQCFastQC Report
Sun 21 May 2023
EGAF00007948618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568500
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17370.30554089709762533No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15610.27458223394898856No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13590.23905013192612135No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10920.1920844327176781No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10380.18258575197889182No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9160.16112576956904134No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9110.1602462620932278No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9010.1584872471416007No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8900.15655233069481092No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8760.15408970976253297No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7980.14036939313984167No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7200.1266490765171504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7040.12383465259454705No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6970.12260334212840808No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6280.11046613896218119No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6200.10905892700087952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)